The Great Reawakening unleashes terrifying powers upon the world, forcing individuals to choose between protecting humanity or preying upon it. Lieutenant Colonel Jan Thorsson, known as 'Harlequin,' finds himself a national hero and a pariah after a bloody battle and a presidential impeachment. He is tasked with leading the Supernatural Operations Corps against Scylla, a powerful rival of Oscar Britton, who seeks to end human apartheid against those with powers. Harlequin must confront Scylla, a figure from his past now twisted by her abilities, to prevent a massacre in New York City and redeem himself with the military.

The premise of Shadow Ops sets up a high-stakes conflict between supernatural factions and established military forces, suggesting a fast-paced narrative with elements of military action and urban fantasy. The description highlights themes of power, choice, and societal division, indicating a focus on character development within a world grappling with extraordinary change. The narrative framework appears to be third-person, following Lieutenant Colonel Jan Thorsson as he navigates personal and professional challenges amidst a burgeoning supernatural conflict. The genre blend points to a story that explores the consequences of power and the struggle for acceptance in a world irrevocably altered by the emergence of the Latent.